Search results for "Gene sequence"

showing 7 items of 7 documents

Arbuscular mycorrhiza - studies on the geosiphon symbiosis lead to the characterization of the first glomeromycotan sugar transporter

2007

Article Addendum ; International audience; The intimate arbuscular mycorrhiza (AM) association between roots and obligate symbiotic Glomeromycota (‘AM fungi’) ‘feeds’ about 80% of land plants. AM forming fungi supply land plants with inorganic nutrients and have an enormous impact on terrestrial ecosystems. In return, AM fungi obtain up to 20% of the plant‑fixed CO2, putatively as monosaccharides. In a recent work we have reported the characterization of the first glomeromycotan monosaccharide transporter, GpMST1, and its gene sequence. We discuss that AM fungi might take up sugars deriving from plant cell‑wall material. The GpMST1 sequence delivers valuable data for the isolation of orthol…

ObligatebiologyEcologyGEOSIPHON SYMBIOSISfungiARBUSCULAR MYCORRHIZAPlant ScienceHEXOSESbiology.organism_classificationMONOSACCHARIDE TRANSPORTERArticle AddendumGlomeromycotaArbuscular mycorrhiza[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants geneticsNutrientSymbiosis[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants geneticsGeosiphonBotanySugar transporterGene sequence
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Draft Genome Sequences of Dickeya sp. Isolates B16 (NIB Z 2098) and S1 (NIB Z 2099) Causing Soft Rot of Phalaenopsis Orchids

2015

ABSTRACT The genus Dickeya contains bacteria causing soft rot of economically important crops and ornamental plants. Here, we report the draft genome sequences of two Dickeya sp. isolates from rotted leaves of Phalaenopsis orchids.

PhalaenopsisbiologyGenus Dickeyafungitechnology industry and agriculturefood and beveragesmacromolecular substancesGene sequencebiology.organism_classificationBioinformaticsSoft rotcomplex mixturesGenomeU30 Research methodsBotanyOrnamental plantGeneticsDickeya sp.ProkaryotesPhalaenopsisH20 Plant diseasesDickeyaMolecular BiologyF30 Plant genetics and breedingGenome Announcements
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The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

2013

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License.-- et al.

0106 biological sciencesConservation geneticsMalegenotype phenotype correlationGorillaComputingMilieux_LEGALASPECTSOFCOMPUTINGarginineGenoma humà01 natural sciencesOculocutaneous albinism type 4single nucleotide polymorphismAlbinismegenetic variabilityGorillaInbreedinggenetic conservationGenetics0303 health sciencesGenomebiologyarticlecopy number variationHigh-Throughput Nucleotide SequencingSLC45A2 geneGenomicszygosityOculocutaneous albinismFloquet de neu (Goril·la)AlbinismFemaleBiotechnologyamino acid substitutionResearch ArticleSLC45A2Gorilla gorilla gorillaHeterozygoteAlbinismMolecular Sequence Datacomparative genomic hybridizationgene sequenceConservation010603 evolutionary biology03 medical and health sciencesWestern lowland gorillabiology.animalmedicineGeneticsheterozygosityAnimalsAmino Acid Sequencegene030304 developmental biologygene identificationWhole genome sequencingnonhumanGorilla gorillaMembrane Transport ProteinsSequence Analysis DNA15. Life on landbiology.organism_classificationmedicine.diseaseGenòmicaData_GENERALMutationbiology.proteinGenèticaoculocutaneous albinismglycineMicrosatellite RepeatsBMC Genomics
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The status of the species Pectinatus portalensis Gonzalez et al. 2005. Request for an Opinion

2008

On the basis of 16S rRNA gene sequence analysis and several key phenotypic features, it was ascertained that the cultures cited as the type strain of the species Pectinatus portalensis, CECT 5841(T) and LMG 22865(T), do not conform to the description, [Gonzalez, J. M., Jurado, V., Laiz, L., Zimmerman, J., Hermosin, B.Saiz-Jimenez, C. (2004). Antonie van Leeuwenhoek 86, 241-248]. The type strain does not exist in any other established culture collection or with the authors who described this species. Therefore, it cannot be included in any scientific study. It is proposed that the Judicial Commission place the name Pectinatus portalensis on the list of rejected names if a suitable replacemen…

Type (biology)Terminology as TopicStrain (biology)Pectinatus portalensisGeneral MedicinePectinatusGene sequenceBiologyMicrobiologyScientific studyEcology Evolution Behavior and SystematicsGenealogyINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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Specific TP53 and/or Ki-ras mutations as independent predictors of clinical outcome in sporadic colorectal adenocarcinomas: results of a 5-year Grupp…

2005

BACKGROUND: Although Ki-ras and TP53 mutations have probably been the genetic abnormalities most exhaustively implicated and studied in colorectal cancer (CRC) progression, their significance in terms of disease relapse and overall survival has not yet clearly been established. PATIENTS AND METHODS: A prospective study was carried out on paired tumor and normal colon tissue samples from a consecutive series of 160 previously-untreated patients, undergoing resective surgery for primary operable sporadic CRC. Mutations within the TP53 (exons 5-8) and Ki-ras (exon 2) genes were detected by PCR-SSCP analyses following sequencing. RESULTS: Mutation analyses of exons 5 to 8 of the TP53 gene showe…

MaleOncologyMultivariate analysisColorectal cancerpolymerase chain reactionmedicine.medical_treatmentLeucovorinColorectal Neoplasmmedicine.disease_causeBioinformaticsExonAntineoplastic Combined Chemotherapy ProtocolsProspective Studiesexongene mutationmultivariate analysiProspective cohort studysingle strand conformation polymorphism MeSH: Adenocarcinomaprotein p53 EMTREE medical terms: adultProto-Oncogene ProteinMutationarticleprotein domainclinical trialHematologyMiddle AgedagedItalypriority journalOncologyChemotherapy AdjuvantLymphatic MetastasisDisease ProgressionFemaleFluorouracilColorectal Neoplasmscancer tissueprognosiprospective studyHumansamplingmedicine.medical_specialtyfolinic acidgene sequenceAdenocarcinomarectum carcinomaProto-Oncogene Proteins p21(ras)outcomes researchProto-Oncogene ProteinsInternal medicinemedicineHumanscontrolled studyneoplasmsGeneNeoplasm StagingChemotherapyEMTREE drug terms: fluorouracillevamisoleAntineoplastic Combined Chemotherapy Protocolcontrolled clinical trialbusiness.industryfluorouracil; folinic acid; K ras protein; levamisole; protein p53 adult; aged; article; cancer tissue; clinical trial; codon; colon adenocarcinoma; colorectal surgery; controlled clinical trial; controlled study; exon; gene mutation; gene sequence; human; human cell; human tissue; Italy; major clinical study; male; multivariate analysis; oncology; outcomes research; polymerase chain reaction; prediction; priority journal; prognosis; prospective study; protein domain; rectum carcinoma; sampling; sequence analysis; single strand conformation polymorphism Adenocarcinoma; Aged; Antineoplastic Combined Chemotherapy Protocols; Chemotherapy Adjuvant; Colorectal Neoplasms; Disease Progression; Female; Fluorouracil; Humans; Leucovorin; Levamisole; Lymphatic Metastasis; Male; Middle Aged; Multivariate Analysis; Mutation; Neoplasm Staging; Prospective Studies; Proto-Oncogene Proteins; ras Proteins; Tumor Suppressor Protein p53 [EMTREE drug terms]human cellLymphatic Metastasipredictionras Proteinmedicine.diseasemajor clinical studyhuman tissueProto-Oncogene Proteins p21(ras)K ras proteinProspective Studiecolon adenocarcinomaMultivariate AnalysisMutationras Proteinscolorectal surgerysequence analysicodonTumor Suppressor Protein p53businessAnnals of Oncology
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The influence of backslopping on lactic acid bacteria diversity in tarhana fermentation

2020

Tarhana is produced at batch systems in which the microbiota has changed accordingly to the microbial load from ingredients. In order to stabilize the microbiota, the effects of backslopping carried out under different temperature regimes (25 and 30 °C), pH (3.70 and 4.00) and inoculation rates (5, 10 and 15%) on lactic acid bacteria (LAB) diversity were determined in tarhana dough. LAB and Total Aerobic Mesophilic Bacteria (TAMB) numbers increased in all tarhana dough samples subjected to backslopping. Temperature and pH significantly affected the microbiological diversity of tarhana whereas the different inoculation rates did not. Tarhana dough showed complex tarhana microbiota following …

genomic DNAtomatochemistry.chemical_compoundCereal fermentationpepperLactobacillalesLactococcusFermented Foods and BeveragesLactic acid bacteriageneticsFood scienceyoghurtfermentationonionbiodiversity0303 health sciencesbiologyLactobacillus brevisBacksloppingpHMicrobiotaTemperaturefermented productGeneral MedicineBreadHydrogen-Ion ConcentrationLactobacillus brevisLactic acidStarter cultureclassificationBatch Cell Culture TechniquesTarhana microbiotasodium chlorideFermented Foodsmicrobial communityMesophilelactic acid bacteriumRNA 16Sgene sequenceArticlewheat flour03 medical and health sciencesinoculationproceduresacidity030304 developmental biologydoughnonhuman030306 microbiologyisolation and purificationmicrobiologyStreptococcusbiology.organism_classificationLactobacilluschemistrymicrobial diversityWeissellaCarnobacteriumFermentationpolymerase chain reaction denaturing gradient gel electrophoresismicrofloraLactobacillus alimentariusbatch cell culturemetabolismLactobacillus alimentariusLactobacillus plantarumBacteriaEnterococcusLeuconostocSettore AGR/16 - Microbiologia AgrariaFood ScienceLactobacillus plantarum
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Data from: Chironomus riparius (Diptera) genome sequencing reveals the impact of minisatellite transposable elements on population divergence

2017

Active transposable elements (TEs) may result in divergent genomic insertion and abundance patterns among conspecific populations. Upon secondary contact, such divergent genetic backgrounds can theoretically give rise to classical Dobzhansky-Muller incompatibilities (DMI), thus contributing to the evolution of endogenous genetic barriers and eventually cause population divergence. We investigated differential TE abundance among conspecific populations of the non-biting midge Chironomus riparius and evaluated their potential role in causing endogenous genetic incompatibilities between these populations. We focussed on a Chironomus-specific TE, the minisatellite-like Cla-element, whose activi…

Pool-SeqChironomus ripariusendogenous selectionBLAST outputfood and beveragesgenome draftfilter duplicatesExonsgene sequencepresentLife sciencesmedicine and health careannotationinsect genomeMedicineTransposon
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